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MinimumDistance
A package for de novo CNV detection in case-parent trios
Bioconductor version: 2.10
Analysis of de novo copy number variants in trios from high-dimensional genotyping platforms
Author: Robert B Scharpf
Maintainer: Moiz Bootwalla <mbootwa1 at jhu.edu>, Robert B Scharpf <rscharpf at jhsph.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("MinimumDistance")
To cite this package in a publication, start R and enter:
citation("MinimumDistance")
Documentation
| R Script | Detection of de novo copy number alterations in case-parent trios | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Bioinformatics, CopyNumberVariants, Microarray, SNP, Software |
| Depends | R (>= 2.14), IRanges(>= 1.13.30) |
| Imports | methods, DNAcopy, utils, msm, lattice, BiocGenerics, VanillaICE(>= 1.17.22), ff, SNPchip(>= 2.0.3), Biobase, foreach, oligoClasses(>= 1.17.38) |
| Suggests | human610quadv1bCrlmm, RUnit |
| System Requirements | |
| License | Artistic-2.0 |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.0.0 |
| Since | Bioconductor 2.10 (R-2.15) |
Package Downloads
| Package Source | MinimumDistance_1.0.0.tar.gz |
| Windows Binary | MinimumDistance_1.0.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | MinimumDistance_1.0.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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