Mulder2012

Predicting functional networks and modules of chromatin factors controlling adult stem cell fate from RNA interference screens

Bioconductor version: 2.10

This package provides functions to reproduce results and figures in Mulder K. et. al. published in Nature Cell Biology 2012 and Wang X. et. al. published in PLoS Computational Biology 2012.

Author: Xin Wang <Xin.Wang at cancer.org.uk>, Florian Markowetz <Florian.Markowetz at cancer.org.uk>

Maintainer: Xin Wang <Xin.Wang at cancer.org.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("Mulder2012")

To cite this package in a publication, start R and enter:

    citation("Mulder2012")

Documentation

PDF	R Script	Arora2010_PAN.pdf
PDF	R Script	Arora2010_sigMod.pdf
PDF	R Script	Main vignette:Posterior association network and enriched functional gene modules inferred from rich phenotypes of gene perturbations
PDF	R Script	Mulder2012_enrich.pdf
PDF	R Script	Mulder2012_PAN.pdf
PDF	R Script	Mulder2012_sigMod.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, ExperimentData
Depends	R (>= 2.14), org.Hs.eg.db, KEGG.db
Imports	igraph, HTSanalyzeR, PANR, RedeR, pvclust, MASS
Suggests	snow
System Requirements
License	Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version	0.2.1

Package Downloads

Package Source	Mulder2012_0.2.1.tar.gz
Windows Binary	Mulder2012_0.2.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	Mulder2012_0.2.1.tgz
Package Downloads Report	Download Stats

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