GSEABase

Gene set enrichment data structures and methods

Bioconductor version: Release (2.12)

This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).

Author: Martin Morgan, Seth Falcon, Robert Gentleman

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GSEABase")

To cite this package in a publication, start R and enter:

    citation("GSEABase")

biocViews	Bioinformatics, Infrastructure, Software
Version	1.22.0
In Bioconductor since	BioC 2.1 (R-2.6)
License	Artistic-2.0
Depends	R (>= 2.6.0), BiocGenerics(>= 0.3.2), Biobase(>= 2.17.8), annotate, methods, graph(>= 1.37.2)
Imports	BiocGenerics, annotate, AnnotationDbi, Biobase, graph, methods, XML
Suggests	hgu95av2.db, GO.db, org.Hs.eg.db, Rgraphviz, ReportingTools
System Requirements
URL
Depends On Me	AGDEX, BicARE, gCMAP, GSVA, GSVAdata, PROMISE
Imports Me	Category, categoryCompare, cellHTS2, gCMAPWeb, GSRI, GSVA, HTSanalyzeR, PCpheno, phenoTest, PROMISE, ReportingTools
Suggests Me	BiocCaseStudies, categoryCompare, gage, GlobalAncova, globaltest, GOstats, GSEAlm, PGSEA, phenoTest

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