To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("Rbowtie")

In most cases, you don't need to download the package archive at all.

Rbowtie

R bowtie wrapper

Bioconductor version: 2.14

This package provides an R wrapper around the popular bowtie short read aligner and around SpliceMap, a de novo splice junction discovery and alignment tool. The package is used by the QuasR bioconductor package. We recommend to use the QuasR package instead of using Rbowtie directly.

Author: Florian Hahne, Anita Lerch, Michael B Stadler

Maintainer: Michael Stadler <michael.stadler at fmi.ch>

Citation (from within R, enter citation("Rbowtie")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("Rbowtie")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("Rbowtie")

 

PDF R Script An introduction to Rbowtie
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Alignment, Sequencing, Software
Version 1.4.5
In Bioconductor since BioC 2.12 (R-3.0)
License Artistic-1.0 | file LICENSE
Depends
Imports
Suggests parallel
System Requirements
URL
Depends On Me QuasR
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source Rbowtie_1.4.5.tar.gz
Windows Binary Rbowtie_1.4.5.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) Rbowtie_1.4.4.tgz
Mac OS X 10.9 (Mavericks) Rbowtie_1.4.5.tgz
Browse/checkout source (username/password: readonly)
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