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biocLite("aroma.light")
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aroma.light
Light-weight methods for normalization and visualization of microarray data using only basic R data types
Bioconductor version: 2.14
Methods for microarray analysis that take basic data types such as matrices and lists of vectors. These methods can be used standalone, be utilized in other packages, or be wrapped up in higher-level classes.
Author: Henrik Bengtsson [aut, cre, cph], Pierre Neuvial [ctb]
Maintainer: Henrik Bengtsson <henrikb at braju.com>
Citation (from within R,
enter citation("aroma.light")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("aroma.light")
Documentation
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Infrastructure, Microarray, MultiChannel, OneChannel, Preprocessing, Software, TwoChannel, Visualization |
| Version | 2.0.0 |
| In Bioconductor since | BioC 1.9 (R-2.4) |
| License | GPL (>= 2) |
| Depends | R (>= 2.14.0), matrixStats (>= 0.8.14) |
| Imports | R.methodsS3 (>= 1.6.1), R.oo (>= 1.18.0) |
| Suggests | R.utils (>= 1.29.8), princurve (>= 1.1-12) |
| System Requirements | |
| URL | http://www.aroma-project.org/ |
| Depends On Me | EDASeq |
| Imports Me | |
| Suggests Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | aroma.light_2.0.0.tar.gz |
| Windows Binary | aroma.light_2.0.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | aroma.light_2.0.0.tgz |
| Mac OS X 10.9 (Mavericks) | aroma.light_2.0.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
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