To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("bumphunter")

In most cases, you don't need to download the package archive at all.

bumphunter

Bump Hunter

Bioconductor version: 2.14

Tools for finding bumps in genomic data

Author: Rafael A. Irizarry, Martin Aryee, Hector Corrada Bravo, Kasper D. Hansen, Harris A. Jaffee

Maintainer: Rafael A. Irizarry <rafa at jhu.edu>

Citation (from within R, enter citation("bumphunter")):

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("bumphunter")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bumphunter")

biocViews	DNAMethylation, Epigenetics, Infrastructure, MultipleComparison, Software
Version	1.4.2
In Bioconductor since	BioC 2.12 (R-3.0)
License	Artistic-2.0
Depends	R (>= 2.10), IRanges, GenomicRanges, foreach, iterators, methods, parallel, locfit
Imports	matrixStats, limma, doRNG, BiocGenerics, utils
Suggests	RUnit, BiocGenerics, doParallel, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene
System Requirements
URL
Depends On Me	minfi
Imports Me
Suggests Me

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