To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("copa")

In most cases, you don't need to download the package archive at all.

copa

Functions to perform cancer outlier profile analysis.

Bioconductor version: 2.14

COPA is a method to find genes that undergo recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles.

Author: James W. MacDonald

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

Citation (from within R, enter citation("copa")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("copa")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("copa")

PDF	R Script	copa Overview
PDF		Reference Manual

Details

biocViews	DifferentialExpression, OneChannel, Software, TwoChannel, Visualization
Version	1.32.0
In Bioconductor since	BioC 1.8 (R-2.3)
License	Artistic-2.0
Depends	Biobase, methods
Imports
Suggests	colonCA
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	copa_1.32.0.tar.gz
Windows Binary	copa_1.32.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	copa_1.32.0.tgz
Mac OS X 10.9 (Mavericks)	copa_1.32.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats

Workflows »

Common Bioconductor workflows include:

Oligonucleotide Arrays
High-throughput Sequencing
Counting Reads for Differential Expression (parathyroideSE vignette)
Annotation
Annotating Variants
Annotating Ranges
Flow Cytometry and other assays
Candidate Binding Sites for Known Transcription Factors
Cloud-enabled cis-eQTL search and annotation

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