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dagLogo

Bioconductor version: 2.14

Visualize significant conserved amino acid sequence pattern in groups based on probability theory

Author: Jianhong Ou, Niraj Nirala, Usha Acharya, Lihua Julie Zhu

Maintainer: Jianhong Ou <jianhong.ou at umassmed.edu>

Citation (from within R, enter citation("dagLogo")):

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("dagLogo")

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browseVignettes("dagLogo")

PDF	R Script	dagLogo Vignette
PDF		Reference Manual

biocViews	GenomicsSequence, SequenceMatching, Software, Visualization
Version	1.2.1
In Bioconductor since	BioC 2.13 (R-3.0)
License	GPL (>=2)
Depends	R (>= 3.0.1), methods, biomaRt, grImport, grid, motifStack
Imports	pheatmap, Biostrings
Suggests	XML, UniProt.ws, RUnit, BiocGenerics, BiocStyle
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