To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("mgsa")

In most cases, you don't need to download the package archive at all.

mgsa

Model-based gene set analysis

Bioconductor version: 2.14

Model-based Gene Set Analysis (MGSA) is a Bayesian modeling approach for gene set enrichment. The package mgsa implements MGSA and tools to use MGSA together with the Gene Ontology.

Author: Sebastian Bauer <mail at sebastianbauer.info>, Julien Gagneur <gagneur at genzentrum.lmu.de>

Maintainer: Sebastian Bauer <mail at sebastianbauer.info>

Citation (from within R, enter citation("mgsa")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("mgsa")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("mgsa")

 

PDF R Script Overview of the mgsa package.
PDF   Reference Manual

Details

biocViews GO, GeneSetEnrichment, Pathways, Software
Version 1.12.0
In Bioconductor since BioC 2.8 (R-2.13)
License Artistic-2.0
Depends R (>= 2.14.0), methods, gplots
Imports graphics, stats, utils
Suggests DBI, RSQLite, GO.db
System Requirements
URL
Depends On Me
Imports Me
Suggests Me gCMAP

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source mgsa_1.12.0.tar.gz
Windows Binary mgsa_1.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) mgsa_1.12.0.tgz
Mac OS X 10.9 (Mavericks) mgsa_1.12.0.tgz
Browse/checkout source (username/password: readonly)
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