To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("plier")

In most cases, you don't need to download the package archive at all.

plier

Implements the Affymetrix PLIER algorithm

Bioconductor version: 2.14

The PLIER (Probe Logarithmic Error Intensity Estimate) method produces an improved signal by accounting for experimentally observed patterns in probe behavior and handling error at the appropriately at low and high signal values.

Author: Affymetrix Inc., Crispin J Miller, PICR

Maintainer: Crispin Miller <cmiller at picr.man.ac.uk>

Citation (from within R, enter citation("plier")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("plier")

Documentation


PDF		Reference Manual
Text		README

Details

biocViews	Software
Version	1.34.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier
License	GPL (>= 2)
Depends	R (>= 2.0), methods
Imports	affy, Biobase, methods
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me	piano, virtualArray

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	plier_1.34.0.tar.gz
Windows Binary	plier_1.34.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	plier_1.34.0.tgz
Mac OS X 10.9 (Mavericks)	plier_1.34.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats

Workflows »

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Oligonucleotide Arrays
High-throughput Sequencing
Counting Reads for Differential Expression (parathyroideSE vignette)
Annotation
Annotating Variants
Annotating Ranges
Flow Cytometry and other assays
Candidate Binding Sites for Known Transcription Factors
Cloud-enabled cis-eQTL search and annotation

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