To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("scsR")
In most cases, you don't need to download the package archive at all.
scsR
SiRNA correction for seed mediated off-target effect
Bioconductor version: 2.14
Corrects genome-wide siRNA screens for seed mediated off-target effect. Suitable functions to identify the effective seeds/miRNAs and to visualize their effect are also provided in the package.
Author: Andrea Franceschini
Maintainer: Andrea Franceschini <andrea.franceschini at isb-sib.ch>, Roger Meier <roger.meier at lmsc.ethz.ch>, Christian von Mering <mering at imls.uzh.ch>
Citation (from within R,
enter citation("scsR")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("scsR")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scsR")
| R Script | scsR Vignette | |
| Reference Manual |
Details
| biocViews | Preprocessing, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) |
| License | GPL-2 |
| Depends | R (>= 2.14.0), methods, BiocGenerics, Biostrings, IRanges, plyr, STRINGdb, tcltk |
| Imports | sqldf, hash, ggplot2, graphics, grDevices, RColorBrewer |
| Suggests | RUnit |
| System Requirements | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | scsR_1.0.0.tar.gz |
| Windows Binary | scsR_1.0.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | scsR_1.0.0.tgz |
| Mac OS X 10.9 (Mavericks) | scsR_1.0.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
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