To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("sigPathway")

In most cases, you don't need to download the package archive at all.

sigPathway

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see sigPathway.

Pathway Analysis

Bioconductor version: 2.8

Conducts pathway analysis by calculating the NT_k and NE_k statistics as described in Tian et al. (2005)

Author: Weil Lai (optimized R and C code), Lu Tian and Peter Park (algorithm development and initial R code)

Maintainer: Weil Lai <wlai at alum.mit.edu>

Citation (from within R, enter citation("sigPathway")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("sigPathway")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sigPathway")

PDF		sigPathway-vignette.pdf
PDF		Reference Manual

biocViews	Bioinformatics, DifferentialExpression, MultipleComparisons, Software
Version	1.20.0
In Bioconductor since	BioC 1.9 (R-2.4) (9.5 years)
License	GPL-2
Depends	R (>= 2.0.0)
Imports
LinkingTo
Suggests	hgu133a.db(>= 1.10.0), XML (>= 1.6-3), AnnotationDbi(>= 1.3.12)
SystemRequirements
Enhances
URL	http://www.pnas.org/cgi/doi/10.1073/pnas.0506577102 http://www.chip.org/~ppark/Supplements/PNAS05.html
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	sigPathway_1.20.0.tar.gz
Windows Binary	sigPathway_1.20.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/sigPathway/tree/release-2.8
Package Short Url	http://bioconductor.org/packages/sigPathway/
Package Downloads Report	Download Stats

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