Package: categoryCompare
Version: 1.10.0
Title: Meta-analysis of high-throughput experiments using feature
        annotations
Author: Robert M. Flight <rflight79@gmail.com>
Maintainer: Robert M. Flight <rflight79@gmail.com>
URL: https://github.com/rmflight/categoryCompare
BugReports: https://github.com/rmflight/categoryCompare/issues
License: GPL-2
Depends: R (>= 2.10), Biobase, BiocGenerics
Suggests: knitr, methods, GO.db, KEGG.db, estrogen, org.Hs.eg.db,
        hgu95av2.db, limma, affy, genefilter
Imports: AnnotationDbi, hwriter, GSEABase, Category, GOstats, annotate,
        colorspace, graph, RCytoscape (>= 1.5.11)
LazyLoad: yes
Description: Calculates significant annotations (categories) in each of
        two (or more) feature (i.e. gene) lists, determines the overlap
        between the annotations, and returns graphical and tabular data
        about the significant annotations and which combinations of
        feature lists the annotations were found to be significant.
        Interactive exploration is facilitated through the use of
        RCytoscape (heavily suggested).
SystemRequirements: Cytoscape (>= 2.8.0) (if used for visualization of
        results, heavily suggested), CytoscapeRPC plugin (>= 1.8)
TODO: Text and HTML output without graphs.
biocViews: Annotation, GO, MultipleComparison, Pathways, GeneExpression
VignetteBuilder: knitr
Packaged: 2014-10-14 02:47:39 UTC; biocbuild
Built: R 3.1.1; ; 2014-10-14 14:13:33 UTC; unix
