GCSscore

DOI: 10.18129/B9.bioc.GCSscore    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see GCSscore.

GCSscore: an R package for microarray analysis for Affymetrix/Thermo Fisher arrays

Bioconductor version: 3.10

For differential expression analysis of 3'IVT and WT-style microarrays from Affymetrix/Thermo-Fisher. Based on S-score algorithm originally described by Zhang et al 2002.

Author: Guy M. Harris & Shahroze Abbas & Michael F. Miles

Maintainer: Guy M. Harris <harrisgm at vcu.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GCSscore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GCSscore")

 

PDF	R Script	SScore primer
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, DifferentialExpression, Microarray, OneChannel, ProprietaryPlatforms, Software
Version	1.0.0
In Bioconductor since	BioC 3.10 (R-3.6) (< 6 months)
License	GPL (>=3)
Depends	R (>= 3.6)
Imports	BiocManager, Biobase, utils, methods, RSQLite, AnnotationForge, devtools, dplR, stringr, graphics, stats, affxparser, data.table
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GCSscore_1.0.0.tar.gz
Windows Binary	GCSscore_1.0.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	GCSscore_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GCSscore
Source Repository (Developer Access)	git clone [email protected]:packages/GCSscore
Package Short Url	https://bioconductor.org/packages/GCSscore/
Package Downloads Report	Download Stats