GEOsubmission

DOI: 10.18129/B9.bioc.GEOsubmission    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see GEOsubmission.

Prepares microarray data for submission to GEO

Bioconductor version: 3.10

Helps to easily submit a microarray dataset and the associated sample information to GEO by preparing a single file for upload (direct deposit).

Author: Alexandre Kuhn <alexandre.m.kuhn at gmail.com>

Maintainer: Alexandre Kuhn <alexandre.m.kuhn at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GEOsubmission")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GEOsubmission")

 

PDF	R Script	GEOsubmission Overview
PDF		Reference Manual

Details

biocViews	Microarray, Software
Version	1.38.0
In Bioconductor since	BioC 2.6 (R-2.11) (10 years)
License	GPL (>= 2)
Depends
Imports	affy, Biobase, utils
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GEOsubmission_1.38.0.tar.gz
Windows Binary	GEOsubmission_1.38.0.zip
Mac OS X 10.11 (El Capitan)	GEOsubmission_1.38.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GEOsubmission
Source Repository (Developer Access)	git clone [email protected]:packages/GEOsubmission
Package Short Url	https://bioconductor.org/packages/GEOsubmission/
Package Downloads Report	Download Stats