This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see RJMCMCNucleosomes.
Bioconductor version: 3.10
This package does nucleosome positioning using informative Multinomial-Dirichlet prior in a t-mixture with reversible jump estimation of nucleosome positions for genome-wide profiling.
Author: Pascal Belleau [aut], Rawane Samb [aut], Astrid DeschĂȘnes [cre, aut], Khader Khadraoui [aut], Lajmi Lakhal-Chaieb [aut], Arnaud Droit [aut]
Maintainer: Astrid DeschĂȘnes <adeschen at hotmail.com>
Citation (from within R,
enter citation("RJMCMCNucleosomes")
):
To install this package, start R (version "3.6") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("RJMCMCNucleosomes")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RJMCMCNucleosomes")
HTML | R Script | Nucleosome Positioning |
Reference Manual | ||
Text | NEWS |
biocViews | Bayesian, BiologicalQuestion, ChIPSeq, Coverage, NucleosomePositioning, Sequencing, Software, StatisticalMethod |
Version | 1.10.0 |
In Bioconductor since | BioC 3.5 (R-3.4) (3 years) |
License | Artistic-2.0 |
Depends | R (>= 3.4), IRanges, GenomicRanges |
Imports | Rcpp (>= 0.12.5), consensusSeekeR, BiocGenerics, GenomeInfoDb, S4Vectors(>= 0.23.10), BiocParallel, stats, graphics, methods, grDevices |
LinkingTo | Rcpp |
Suggests | BiocStyle, knitr, rmarkdown, nucleoSim, RUnit |
SystemRequirements | Rcpp |
Enhances | |
URL | https://github.com/ArnaudDroitLab/RJMCMCNucleosomes |
BugReports | https://github.com/ArnaudDroitLab/RJMCMCNucleosomes/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | RJMCMCNucleosomes_1.10.0.tar.gz |
Windows Binary | RJMCMCNucleosomes_1.10.0.zip |
Mac OS X 10.11 (El Capitan) | RJMCMCNucleosomes_1.10.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/RJMCMCNucleosomes |
Source Repository (Developer Access) | git clone [email protected]:packages/RJMCMCNucleosomes |
Package Short Url | https://bioconductor.org/packages/RJMCMCNucleosomes/ |
Package Downloads Report | Download Stats |
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