KEGGandMetacoreDzPathwaysGEO

DOI: 10.18129/B9.bioc.KEGGandMetacoreDzPathwaysGEO    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see KEGGandMetacoreDzPathwaysGEO.

Disease Datasets from GEO

Bioconductor version: 3.10

This is a collection of 18 data sets for which the phenotype is a disease with a corresponding pathway in either KEGG or metacore database.This collection of datasets were used as gold standard in comparing gene set analysis methods.

Author: Gaurav Bhatti

Maintainer: Gaurav Bhatti <gbhatti at med.wayne.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("KEGGandMetacoreDzPathwaysGEO")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("KEGGandMetacoreDzPathwaysGEO")

 

PDF	R Script	KEGGandMetacoreDzPathwaysGEO Vignette
PDF		Reference Manual

Details

biocViews	ExperimentData, GEO
Version	1.6.0
License	GPL-2
Depends	R (>= 2.15.0)
Imports	Biobase, BiocGenerics
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Depends On Me
Imports Me	GSEABenchmarkeR
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	KEGGandMetacoreDzPathwaysGEO_1.6.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/KEGGandMetacoreDzPathwaysGEO
Source Repository (Developer Access)	git clone [email protected]:packages/KEGGandMetacoreDzPathwaysGEO
Package Short Url	https://bioconductor.org/packages/KEGGandMetacoreDzPathwaysGEO/
Package Downloads Report	Download Stats