HybridMTest

DOI: 10.18129/B9.bioc.HybridMTest    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see HybridMTest.

Hybrid Multiple Testing

Bioconductor version: 3.11

Performs hybrid multiple testing that incorporates method selection and assumption evaluations into the analysis using empirical Bayes probability (EBP) estimates obtained by Grenander density estimation. For instance, for 3-group comparison analysis, Hybrid Multiple testing considers EBPs as weighted EBPs between F-test and H-test with EBPs from Shapiro Wilk test of normality as weigth. Instead of just using EBPs from F-test only or using H-test only, this methodology combines both types of EBPs through EBPs from Shapiro Wilk test of normality. This methodology uses then the law of total EBPs.

Author: Stan Pounds <stanley.pounds at stjude.org>, Demba Fofana <demba.fofana at stjude.org>

Maintainer: Demba Fofana <demba.fofana at stjude.org>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HybridMTest")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HybridMTest")

 

PDF	R Script	Hybrid Multiple Testing
PDF		Reference Manual

Details

biocViews	GeneExpression, Genetics, Microarray, Software
Version	1.32.0
In Bioconductor since	BioC 2.10 (R-2.15) (8.5 years)
License	GPL Version 2 or later
Depends	R (>= 2.9.0), Biobase, fdrtool, MASS, survival
Imports	stats
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	HybridMTest_1.32.0.tar.gz
Windows Binary	HybridMTest_1.32.0.zip
macOS 10.13 (High Sierra)	HybridMTest_1.32.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/HybridMTest
Source Repository (Developer Access)	git clone [email protected]:packages/HybridMTest
Package Short Url	https://bioconductor.org/packages/HybridMTest/
Package Downloads Report	Download Stats