MergeMaid

DOI: 10.18129/B9.bioc.MergeMaid    

This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see MergeMaid.

Merge Maid

Bioconductor version: 3.11

The functions in this R extension are intended for cross-study comparison of gene expression array data. Required from the user is gene expression matrices, their corresponding gene-id vectors and other useful information, and they could be 'list','matrix', or 'ExpressionSet'. The main function is 'mergeExprs' which transforms the input objects into data in the merged format, such that common genes in different datasets can be easily found. And the function 'intcor' calculate the correlation coefficients. Other functions use the output from 'modelOutcome' to graphically display the results and cross-validate associations of gene expression data with survival.

Author: Xiaogang Zhong <zhong at ams.jhu.edu> Leslie Cope <cope at jhu.edu> Elizabeth Garrett <esg at jhu.edu> Giovanni Parmigiani <gp at jhu.edu>

Maintainer: Xiaogang Zhong <zhong at ams.jhu.edu>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MergeMaid")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MergeMaid")

 

PDF		MergeMaid primer
PDF		Reference Manual

Details

biocViews	DifferentialExpression, Microarray, Software, Visualization
Version	2.59.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 15.5 years)
License	GPL (>= 2)
Depends	R (>= 2.10.0), survival, Biobase, MASS, methods
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL	http://astor.som.jhmi.edu/MergeMaid
Depends On Me
Imports Me	CrossICC, metaArray, XDE
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MergeMaid_2.59.0.tar.gz
Windows Binary	MergeMaid_2.59.0.zip
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/MergeMaid
Source Repository (Developer Access)	git clone [email protected]:packages/MergeMaid
Package Short Url	https://bioconductor.org/packages/MergeMaid/
Package Downloads Report	Download Stats