This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see Rqc.
Bioconductor version: 3.11
Rqc is an optimised tool designed for quality control and assessment of high-throughput sequencing data. It performs parallel processing of entire files and produces a report which contains a set of high-resolution graphics.
Author: Welliton Souza, Benilton Carvalho <beniltoncarvalho at gmail.com>
Maintainer: Welliton Souza <well309 at gmail.com>
Citation (from within R,
enter citation("Rqc")
):
To install this package, start R (version "4.0") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("Rqc")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rqc")
HTML | R Script | Using Rqc |
Reference Manual | ||
Text | NEWS |
biocViews | DataImport, QualityControl, Sequencing, Software |
Version | 1.22.0 |
In Bioconductor since | BioC 3.0 (R-3.1) (6 years) |
License | GPL (>= 2) |
Depends | BiocParallel, ShortRead, ggplot2 |
Imports | BiocGenerics(>= 0.25.1), Biostrings, IRanges, methods, S4Vectors, knitr (>= 1.7), BiocStyle, plyr, markdown, grid, reshape2, Rcpp (>= 0.11.6), biovizBase, shiny, Rsamtools, GenomicAlignments, GenomicFiles |
LinkingTo | Rcpp |
Suggests | testthat |
SystemRequirements | |
Enhances | |
URL | https://github.com/labbcb/Rqc |
BugReports | https://github.com/labbcb/Rqc/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | Rqc_1.22.0.tar.gz |
Windows Binary | |
macOS 10.13 (High Sierra) | Rqc_1.22.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/Rqc |
Source Repository (Developer Access) | git clone [email protected]:packages/Rqc |
Package Short Url | https://bioconductor.org/packages/Rqc/ |
Package Downloads Report | Download Stats |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: