annaffy

DOI: 10.18129/B9.bioc.annaffy    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see annaffy.

Annotation tools for Affymetrix biological metadata

Bioconductor version: 3.11

Functions for handling data from Bioconductor Affymetrix annotation data packages. Produces compact HTML and text reports including experimental data and URL links to many online databases. Allows searching biological metadata using various criteria.

Author: Colin A. Smith <colin at colinsmith.org>

Maintainer: Colin A. Smith <colin at colinsmith.org>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("annaffy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("annaffy")

 

PDF	R Script	annaffy Primer
PDF		Reference Manual

Details

biocViews	Annotation, GO, Microarray, OneChannel, Pathways, ReportWriting, Software
Version	1.60.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 15.5 years)
License	LGPL
Depends	R (>= 2.5.0), methods, Biobase, GO.db, KEGG.db
Imports	AnnotationDbi(>= 0.1.15), DBI
LinkingTo
Suggests	hgu95av2.db, multtest, tcltk
SystemRequirements
Enhances
URL
Depends On Me	a4Base, a4Reporting, PGSEA, webbioc
Imports Me
Suggests Me	AffyExpress, ArrayTools, BiocCaseStudies
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	annaffy_1.60.0.tar.gz
Windows Binary	annaffy_1.60.0.zip
macOS 10.13 (High Sierra)	annaffy_1.60.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/annaffy
Source Repository (Developer Access)	git clone [email protected]:packages/annaffy
Package Short Url	https://bioconductor.org/packages/annaffy/
Package Downloads Report	Download Stats