RNAseqData.HNRNPC.bam.chr14

DOI: 10.18129/B9.bioc.RNAseqData.HNRNPC.bam.chr14    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see RNAseqData.HNRNPC.bam.chr14.

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

Bioconductor version: 3.11

The package contains 8 BAM files, 1 per sequencing run. Each BAM file was obtained by (1) aligning the reads (paired-end) to the full hg19 genome with TopHat2, and then (2) subsetting to keep only alignments on chr14. See accession number E-MTAB-1147 in the ArrayExpress database for details about the experiment, including links to the published study (by Zarnack et al., 2012) and to the FASTQ files.

Author: Hervé Pagès

Maintainer: Hervé Pagès <hpages at fredhutch.org>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RNAseqData.HNRNPC.bam.chr14")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	ArrayExpress, ExperimentData, GEO, Genome, Homo_sapiens_Data, NCI, RNASeqData, SequencingData
Version	0.26.0
License	LGPL
Depends
Imports
LinkingTo
Suggests	GenomicAlignments, BiocManager
SystemRequirements
Enhances
URL	http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1147/
Depends On Me	samExploreR, sequencing
Imports Me
Suggests Me	BiocParallel, GenomicAlignments, GenomicFiles, GenomicRanges, roar, Rsamtools, SplicingGraphs
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RNAseqData.HNRNPC.bam.chr14_0.26.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/RNAseqData.HNRNPC.bam.chr14
Source Repository (Developer Access)	git clone [email protected]:packages/RNAseqData.HNRNPC.bam.chr14
Package Short Url	https://bioconductor.org/packages/RNAseqData.HNRNPC.bam.chr14/
Package Downloads Report	Download Stats