LoomExperiment

DOI: 10.18129/B9.bioc.LoomExperiment    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see LoomExperiment.

LoomExperiment container

Bioconductor version: 3.12

The LoomExperiment class provide a means to easily convert Bioconductor's "Experiment" classes to loom files and vice versa.

Author: Martin Morgan, Daniel Van Twisk

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("LoomExperiment")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LoomExperiment")

 

HTML	R Script	An introduction to the LoomExperiment class
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, DataRepresentation, ImmunoOncology, Infrastructure, SingleCell, Software
Version	1.8.0
In Bioconductor since	BioC 3.8 (R-3.5) (2.5 years)
License	Artistic-2.0
Depends	R (>= 3.5.0), S4Vectors, SingleCellExperiment, SummarizedExperiment, methods, rhdf5, rtracklayer
Imports	DelayedArray, GenomicRanges, HDF5Array, Matrix, stats, stringr, utils
LinkingTo
Suggests	testthat, BiocStyle, knitr, reticulate
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	HCAExplorer
Suggests Me	HCAMatrixBrowser
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	LoomExperiment_1.8.0.tar.gz
Windows Binary	LoomExperiment_1.8.0.zip
macOS 10.13 (High Sierra)	LoomExperiment_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/LoomExperiment
Source Repository (Developer Access)	git clone [email protected]:packages/LoomExperiment
Package Short Url	https://bioconductor.org/packages/LoomExperiment/
Package Downloads Report	Download Stats