MetaNeighbor

DOI: 10.18129/B9.bioc.MetaNeighbor    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see MetaNeighbor.

Single cell replicability analysis

Bioconductor version: 3.12

MetaNeighbor allows users to quantify cell type replicability across datasets using neighbor voting.

Author: Megan Crow [aut, cre], Sara Ballouz [ctb], Manthan Shah [ctb], Stephan Fischer [ctb], Jesse Gillis [aut]

Maintainer: Stephan Fischer <fischer at cshl.edu>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MetaNeighbor")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MetaNeighbor")

 

PDF	R Script	MetaNeighbor user guide
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	GO, GeneExpression, ImmunoOncology, MultipleComparison, SingleCell, Software, Transcriptomics
Version	1.10.0
In Bioconductor since	BioC 3.7 (R-3.5) (3 years)
License	MIT + file LICENSE
Depends	R (>= 3.5)
Imports	grDevices, graphics, methods, stats (>= 3.4), utils (>= 3.4), Matrix (>= 1.2), matrixStats (>= 0.54), beanplot (>= 1.2), gplots (>= 3.0.1), RColorBrewer (>= 1.1.2), SummarizedExperiment(>= 1.12), SingleCellExperiment, igraph, dplyr, tidyr, tibble, ggplot2
LinkingTo
Suggests	knitr (>= 1.17), rmarkdown (>= 1.6), testthat (>= 1.0.2), UpSetR
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MetaNeighbor_1.10.0.tar.gz
Windows Binary	MetaNeighbor_1.10.0.zip
macOS 10.13 (High Sierra)	MetaNeighbor_1.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MetaNeighbor
Source Repository (Developer Access)	git clone [email protected]:packages/MetaNeighbor
Package Short Url	https://bioconductor.org/packages/MetaNeighbor/
Package Downloads Report	Download Stats