focalCall

DOI: 10.18129/B9.bioc.focalCall    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see focalCall.

Detection of focal aberrations in DNA copy number data

Bioconductor version: 3.12

Detection of genomic focal aberrations in high-resolution DNA copy number data

Author: Oscar Krijgsman

Maintainer: Oscar Krijgsman <oscarkrijgsman at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("focalCall")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Microarray, Preprocessing, Sequencing, Software, Visualization
Version	1.24.0
In Bioconductor since	BioC 3.0 (R-3.1) (6.5 years)
License	GPL-2
Depends	R (>= 2.10.0), CGHcall
Imports
LinkingTo
Suggests	RUnit, BiocGenerics
SystemRequirements
Enhances
URL	https://github.com/OscarKrijgsman/focalCall
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/focalCall
Source Repository (Developer Access)	git clone [email protected]:packages/focalCall
Package Short Url	https://bioconductor.org/packages/focalCall/
Package Downloads Report	Download Stats