methVisual

DOI: 10.18129/B9.bioc.methVisual    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see methVisual.

Methods for visualization and statistics on DNA methylation data

Bioconductor version: 3.12

The package 'methVisual' allows the visualization of DNA methylation data after bisulfite sequencing.

Author: A. Zackay, C. Steinhoff

Maintainer: Arie Zackay <arie.zackay at mail.huji.ac.il>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("methVisual")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Classification, Clustering, DNAMethylation, Software
Version	1.42.0
In Bioconductor since	BioC 2.6 (R-2.11) (11 years)
License	GPL (>= 2)
Depends	R (>= 2.11.0), Biostrings(>= 2.4.8), plotrix, gsubfn, grid, sqldf
Imports	Biostrings, ca, graphics, grDevices, grid, gridBase, IRanges, stats, utils
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/methVisual
Source Repository (Developer Access)	git clone [email protected]:packages/methVisual
Package Short Url	https://bioconductor.org/packages/methVisual/
Package Downloads Report	Download Stats