FlowSorted.CordBloodCombined.450k

DOI: 10.18129/B9.bioc.FlowSorted.CordBloodCombined.450k    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see FlowSorted.CordBloodCombined.450k.

Illumina 450k/EPIC data on FACS and MACS umbilical blood cells

Bioconductor version: 3.12

Raw data objects to be used for umbilical cord blood cell proportion estimation in minfi and similar packages. The FlowSorted.CordBloodCombined.450k object is based in samples assayed by Bakulski et al, Gervin et al., de Goede et al., and Lin et al.

Author: Lucas A. Salas [cre, aut], Kristina Gervin [aut], Meaghan C. Jones [aut], Kelly M. Bakulski [ctb], Devin C. Koestler [ctb], John K. Wiencke [ctb], Karl T. Kelsey [ctb], Robert Lyle [ctb], Brock C. Christensen [ctb], Janine Felix [ctb]

Maintainer: Lucas A. Salas <lucas.a.salas.diaz at dartmouth.edu>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("FlowSorted.CordBloodCombined.450k")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("FlowSorted.CordBloodCombined.450k")

 

HTML	R Script	FlowSorted.CordBloodCombined.450k
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, ExperimentHub, Genome, Homo_sapiens_Data, MethylationArrayData, MicroarrayData, Tissue, TissueMicroarrayData
Version	1.6.0
License	GPL-3
Depends	R (>= 3.6), minfi(>= 1.21.2), SummarizedExperiment, IlluminaHumanMethylation450kanno.ilmn12.hg19(>= 0.2.1), IlluminaHumanMethylationEPICanno.ilm10b4.hg19, ExperimentHub(>= 1.9.1), FlowSorted.Blood.EPIC, utils
Imports
LinkingTo
Suggests	knitr, rmarkdown, testthat, IlluminaHumanMethylation450kmanifest(>= 0.2.0), IlluminaHumanMethylationEPICanno.ilm10b2.hg19
SystemRequirements
Enhances
URL	https://github.com/immunomethylomics/FlowSorted.CordBloodCombined.450k
BugReports	https://github.com/immunomethylomics/FlowSorted.CordBloodCombined.450k/issues.
Depends On Me
Imports Me
Suggests Me	FlowSorted.Blood.EPIC
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	FlowSorted.CordBloodCombined.450k_1.6.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/FlowSorted.CordBloodCombined.450k
Source Repository (Developer Access)	git clone [email protected]:packages/FlowSorted.CordBloodCombined.450k
Package Short Url	https://bioconductor.org/packages/FlowSorted.CordBloodCombined.450k/
Package Downloads Report	Download Stats