RcisTarget.hg19.motifDBs.cisbpOnly.500bp

DOI: 10.18129/B9.bioc.RcisTarget.hg19.motifDBs.cisbpOnly.500bp    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see RcisTarget.hg19.motifDBs.cisbpOnly.500bp.

RcisTarget motif databases for human (hg19) - Subset of 4.6k motifs

Bioconductor version: 3.12

RcisTarget databases: Gene-based motif rankings and annotation to transcription factors. This package contains a subset of 4.6k motifs (cisbp motifs), scored only within 500bp upstream and the TSS. See RcisTarget tutorial to download the full databases, containing 20k motifs and search space up to 10kbp around the TSS.

Author: Sara Aibar, Gert Hulselmans, Stein Aerts. Laboratory of Computational Biology, KU Leuven Center for Human Genetics. Leuven, Belgium.

Maintainer: Sara Aibar <sara.aibar at kuleuven.vib.be>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RcisTarget.hg19.motifDBs.cisbpOnly.500bp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, Homo_sapiens_Data
Version	1.10.0
License	GPL-3
Depends	R (>= 3.3)
Imports	data.table
LinkingTo
Suggests
SystemRequirements
Enhances
URL	http://scenic.aertslab.org
Depends On Me
Imports Me
Suggests Me	RcisTarget
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RcisTarget.hg19.motifDBs.cisbpOnly.500bp_1.10.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/RcisTarget.hg19.motifDBs.cisbpOnly.500bp
Source Repository (Developer Access)	git clone [email protected]:packages/RcisTarget.hg19.motifDBs.cisbpOnly.500bp
Package Short Url	https://bioconductor.org/packages/RcisTarget.hg19.motifDBs.cisbpOnly.500bp/
Package Downloads Report	Download Stats