onlineFDR

DOI: 10.18129/B9.bioc.onlineFDR    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see onlineFDR.

Online error control

Bioconductor version: 3.13

This package allows users to control the false discovery rate (FDR) or familywise error rate (FWER) for online hypothesis testing, where hypotheses arrive sequentially in a stream. In this framework, a null hypothesis is rejected based only on the previous decisions, as the future p-values and the number of hypotheses to be tested are unknown.

Author: David S. Robertson [aut, cre], Lathan Liou [aut], Aaditya Ramdas [aut], Adel Javanmard [ctb], Andrea Montanari [ctb], Jinjin Tian [ctb], Tijana Zrnic [ctb], Natasha A. Karp [aut]

Maintainer: David S. Robertson <david.robertson at mrc-bsu.cam.ac.uk>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("onlineFDR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("onlineFDR")

 

HTML	R Script	Advanced usage of onlineFDR
HTML	R Script	The theory behind onlineFDR
HTML	R Script	Using the onlineFDR package
PDF		Reference Manual
Text		NEWS

Details

biocViews	MultipleComparison, Software, StatisticalMethod
Version	2.0.0
In Bioconductor since	BioC 3.8 (R-3.5) (3 years)
License	GPL-3
Depends
Imports	stats, Rcpp, RcppProgress, dplyr, tidyr, ggplot2, progress
LinkingTo	Rcpp, RcppProgress
Suggests	knitr, rmarkdown, testthat, covr
SystemRequirements
Enhances
URL	https://dsrobertson.github.io/onlineFDR/index.html
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	onlineFDR_2.0.0.tar.gz
Windows Binary	onlineFDR_2.0.0.zip
macOS 10.13 (High Sierra)	onlineFDR_2.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/onlineFDR
Source Repository (Developer Access)	git clone [email protected]:packages/onlineFDR
Package Short Url	https://bioconductor.org/packages/onlineFDR/
Package Downloads Report	Download Stats