This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see DeMixT.
Bioconductor version: 3.15
DeMixT is a software package that performs deconvolution on transcriptome data from a mixture of two or three components.
Author: Zeya Wang <zw17.rice at gmail.com>, Shaolong Cao<scao at mdanderson.org>, Wenyi Wang <wwang7 at at mdanderson.org>
Maintainer: Shuai Guo <shuai.guo at uth.tmc.edu>
Citation (from within R,
enter citation("DeMixT")
):
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("DeMixT")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DeMixT")
HTML | R Script | DeMixT.Rmd |
Reference Manual | ||
Text | NEWS |
biocViews | Classification, Coverage, GeneExpression, Microarray, Sequencing, Software, StatisticalMethod, TissueMicroarray |
Version | 1.12.0 |
In Bioconductor since | BioC 3.9 (R-3.6) (3.5 years) |
License | GPL-3 |
Depends | R (>= 3.6.0), parallel, Rcpp (>= 1.0.0), SummarizedExperiment, knitr, KernSmooth, matrixcalc, rmarkdown |
Imports | matrixStats, stats, truncdist, base64enc, ggplot2 |
LinkingTo | Rcpp |
Suggests | |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | DeMixT_1.12.0.tar.gz |
Windows Binary | DeMixT_1.12.0.zip |
macOS Binary (x86_64) | DeMixT_1.12.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/DeMixT |
Source Repository (Developer Access) | git clone [email protected]:packages/DeMixT |
Package Short Url | https://bioconductor.org/packages/DeMixT/ |
Package Downloads Report | Download Stats |
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