Dune

DOI: 10.18129/B9.bioc.Dune    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see Dune.

Improving replicability in single-cell RNA-Seq cell type discovery

Bioconductor version: 3.15

Given a set of clustering labels, Dune merges pairs of clusters to increase mean ARI between labels, improving replicability.

Author: Hector Roux de Bezieux [aut, cre] , Kelly Street [aut]

Maintainer: Hector Roux de Bezieux <hector.rouxdebezieux at berkeley.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Dune")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Dune")

 

HTML	R Script	Dune Vignette
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Clustering, GeneExpression, RNASeq, SingleCell, Software, Transcriptomics, Visualization
Version	1.8.0
In Bioconductor since	BioC 3.11 (R-4.0) (2.5 years)
License	MIT + file LICENSE
Depends	R (>= 3.6)
Imports	BiocParallel, SummarizedExperiment, utils, ggplot2, dplyr, tidyr, RColorBrewer, magrittr, gganimate, purrr, aricode
LinkingTo
Suggests	knitr, rmarkdown, testthat (>= 2.1.0)
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Dune_1.8.0.tar.gz
Windows Binary	Dune_1.8.0.zip
macOS Binary (x86_64)	Dune_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Dune
Source Repository (Developer Access)	git clone [email protected]:packages/Dune
Package Short Url	https://bioconductor.org/packages/Dune/
Package Downloads Report	Download Stats