pageRank

DOI: 10.18129/B9.bioc.pageRank    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see pageRank.

Temporal and Multiplex PageRank for Gene Regulatory Network Analysis

Bioconductor version: 3.15

Implemented temporal PageRank analysis as defined by Rozenshtein and Gionis. Implemented multiplex PageRank as defined by Halu et al. Applied temporal and multiplex PageRank in gene regulatory network analysis.

Author: Hongxu Ding [aut, cre, ctb, cph]

Maintainer: Hongxu Ding <hd2326 at columbia.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pageRank")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pageRank")

 

PDF	R Script	introduction.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneTarget, Network, Software, StatisticalMethod
Version	1.6.0
In Bioconductor since	BioC 3.12 (R-4.0) (2 years)
License	GPL-2
Depends	R (>= 4.0)
Imports	GenomicRanges, igraph, motifmatchr, stats, utils, grDevices, graphics
LinkingTo
Suggests	bcellViper, BSgenome.Hsapiens.UCSC.hg19, JASPAR2018, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, TFBSTools, GenomicFeatures, annotate
SystemRequirements
Enhances
URL	https://github.com/hd2326/pageRank
BugReports	https://github.com/hd2326/pageRank/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	pageRank_1.6.0.tar.gz
Windows Binary	pageRank_1.6.0.zip
macOS Binary (x86_64)	pageRank_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/pageRank
Source Repository (Developer Access)	git clone [email protected]:packages/pageRank
Package Short Url	https://bioconductor.org/packages/pageRank/
Package Downloads Report	Download Stats