rSWeeP

DOI: 10.18129/B9.bioc.rSWeeP    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see rSWeeP.

Functions to creation of low dimensional comparative matrices of Amino Acid Sequence occurrences

Bioconductor version: 3.15

The SWeeP method was developed to favor the analizes between amino acids sequences and to assist alignment free phylogenetic studies. This method is based on the concept of sparse words, which is applied in the scan of biological sequences and its the conversion in a matrix of ocurrences. Aiming the generation of low dimensional matrices of Amino Acid Sequence occurrences.

Author: Danrley R. Fernandes [com, cre, aut]

Maintainer: Danrley R. Fernandes <DanrleyRF at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rSWeeP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rSWeeP")

 

HTML	R Script	rSWeeP
PDF		Reference Manual
Text		NEWS

Details

biocViews	Alignment, Genetics, Sequencing, Software, StatisticalMethod, SupportVectorMachine, Technology
Version	1.8.0
In Bioconductor since	BioC 3.11 (R-4.0) (2.5 years)
License	GPL-3
Depends	R (>= 4.0)
Imports	pracma, stats
LinkingTo
Suggests	Biostrings, methods, knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rSWeeP_1.8.0.tar.gz
Windows Binary	rSWeeP_1.8.0.zip (64-bit only)
macOS Binary (x86_64)	rSWeeP_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/rSWeeP
Source Repository (Developer Access)	git clone [email protected]:packages/rSWeeP
Package Short Url	https://bioconductor.org/packages/rSWeeP/
Package Downloads Report	Download Stats