add_genesymbol	add_genesymbol
assess_decoy_rate	assess_decoy_rate
assess_fdr_byrun	assess_fdr_byrun
assess_fdr_overall	assess_fdr_overall
convert4aLFQ	convert4aLFQ
convert4mapDIA	convert4mapDIA
convert4MSstats	convert4MSstats
convert4PECA	convert4PECA
convert4pythonscript	convert4pythonscript
convert_protein_ids	convert_protein_ids
count_analytes	count_analytes
data	OpenSWATH_data
disaggregate	disaggregate
filter_all_peptides	filter_all_peptides
filter_mscore	filter_mscore
filter_mscore_condition	filter_mscore_condition
filter_mscore_fdr	filter_mscore_fdr
filter_mscore_freqobs	filter_mscore_freqobs
filter_on_max_peptides	filter_on_max_peptides
filter_on_min_peptides	filter_on_min_peptides
filter_proteotypic_peptides	filter_proteotypic_peptides
import_data	import_data
JPP_update	JPP_update
load_mart	load_mart
mscore4assayfdr	mscore4assayfdr
mscore4pepfdr	mscore4pepfdr
mscore4protfdr	mscore4protfdr
MSstats_data	MSstats_data
OpenSWATH_data	OpenSWATH_data
plot.fdr_cube	plot.fdr_cube
plot.fdr_table	plot.fdr_table
plot_correlation_between_samples	plot_correlation_between_samples
plot_variation	plot_variation
plot_variation_vs_total	plot_variation_vs_total
reduce_OpenSWATH_output	reduce_OpenSWATH_output
removeDecoyProteins	removeDecoyProteins
rmDecoyProt	rmDecoyProt
sample_annotation	sample_annotation
Spyogenes	Spyogenes
Study_design	Study_design
transform_MSstats_OpenSWATH	transform_MSstats_OpenSWATH
unifyProteinGroupLabels	unifyProteinGroupLabels
validate_columns	validate_columns
write_matrix_peptides	write_matrix_peptides
write_matrix_proteins	write_matrix_proteins
