ComPrAn

DOI: 10.18129/B9.bioc.ComPrAn  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see ComPrAn.

Complexome Profiling Analysis package

Bioconductor version: 3.16

This package is for analysis of SILAC labeled complexome profiling data. It uses peptide table in tab-delimited format as an input and produces ready-to-use tables and plots.

Author: Rick Scavetta [aut], Petra Palenikova [aut, cre]

Maintainer: Petra Palenikova <palenikova3 at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ComPrAn")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ComPrAn")

 

HTML	R Script	fileFormats.html
HTML	R Script	Protein workflow
HTML	R Script	SILAC complexomics
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	MassSpectrometry, Proteomics, Software, Visualization
Version	1.6.0
In Bioconductor since	BioC 3.13 (R-4.1) (2 years)
License	MIT + file LICENSE
Depends
Imports	data.table, dplyr, forcats, ggplot2, magrittr, purrr, tidyr, rlang, stringr, shiny, DT, RColorBrewer, VennDiagram, rio, scales, shinydashboard, shinyjs, stats, tibble, grid
LinkingTo
Suggests	testthat (>= 2.1.0), knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ComPrAn_1.6.0.tar.gz
Windows Binary	ComPrAn_1.6.0.zip
macOS Binary (x86_64)	ComPrAn_1.6.0.tgz
macOS Binary (arm64)	ComPrAn_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ComPrAn
Source Repository (Developer Access)	git clone [email protected]:packages/ComPrAn
Bioc Package Browser	https://code.bioconductor.org/browse/ComPrAn/
Package Short Url	https://bioconductor.org/packages/ComPrAn/
Package Downloads Report	Download Stats