MiChip

DOI: 10.18129/B9.bioc.MiChip  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see MiChip.

MiChip Parsing and Summarizing Functions

Bioconductor version: 3.16

This package takes the MiChip miRNA microarray .grp scanner output files and parses these out, providing summary and plotting functions to analyse MiChip hybridizations. A set of hybridizations is packaged into an ExpressionSet allowing it to be used by other BioConductor packages.

Author: Jonathon Blake <blake at embl.de>

Maintainer: Jonathon Blake <blake at embl.de>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MiChip")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MiChip")

 

PDF	R Script	MiChip miRNA Microarray Processing
PDF		Reference Manual

Details

biocViews	Microarray, Preprocessing, Software
Version	1.52.0
In Bioconductor since	BioC 2.5 (R-2.10) (13.5 years)
License	GPL (>= 2)
Depends	R (>= 2.3.0), Biobase
Imports	Biobase
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MiChip_1.52.0.tar.gz
Windows Binary	MiChip_1.52.0.zip
macOS Binary (x86_64)	MiChip_1.52.0.tgz
macOS Binary (arm64)	MiChip_1.52.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MiChip
Source Repository (Developer Access)	git clone [email protected]:packages/MiChip
Bioc Package Browser	https://code.bioconductor.org/browse/MiChip/
Package Short Url	https://bioconductor.org/packages/MiChip/
Package Downloads Report	Download Stats