MuData

DOI: 10.18129/B9.bioc.MuData  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see MuData.

Serialization for MultiAssayExperiment Objects

Bioconductor version: 3.16

Save MultiAssayExperiments to h5mu files supported by muon and mudata. Muon is a Python framework for multimodal omics data analysis. It uses an HDF5-based format for data storage.

Author: Danila Bredikhin [aut, cre] , Ilia Kats [aut]

Maintainer: Danila Bredikhin <danila.bredikhin at embl.de>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MuData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MuData")

 

HTML	R Script	Blood CITE-seq with MuData
HTML	R Script	Cord Blood CITE-seq with MuData
HTML	R Script	Getting started with MuDataMae
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, Software
Version	1.2.0
In Bioconductor since	BioC 3.15 (R-4.2) (1 year)
License	GPL-3
Depends	Matrix, S4Vectors, rhdf5
Imports	methods, stats, MultiAssayExperiment, SingleCellExperiment, SummarizedExperiment, DelayedArray
LinkingTo
Suggests	HDF5Array, rmarkdown, knitr, fs, testthat, BiocStyle, covr, SingleCellMultiModal, CiteFuse, scater
SystemRequirements
Enhances
URL	https://github.com/ilia-kats/MuData
BugReports	https://github.com/ilia-kats/MuData/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MuData_1.2.0.tar.gz
Windows Binary	MuData_1.2.0.zip
macOS Binary (x86_64)	MuData_1.2.0.tgz
macOS Binary (arm64)	MuData_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MuData
Source Repository (Developer Access)	git clone [email protected]:packages/MuData
Bioc Package Browser	https://code.bioconductor.org/browse/MuData/
Package Short Url	https://bioconductor.org/packages/MuData/
Package Downloads Report	Download Stats