This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see heatmaps.
Bioconductor version: 3.16
This package provides functions for plotting heatmaps of genome-wide data across genomic intervals, such as ChIP-seq signals at peaks or across promoters. Many functions are also provided for investigating sequence features.
Author: Malcolm Perry <mgperry32 at gmail.com>
Maintainer: Malcolm Perry <mgperry32 at gmail.com>
Citation (from within R,
enter citation("heatmaps")
):
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("heatmaps")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("heatmaps")
HTML | R Script | Vignette Title |
Reference Manual | ||
Text | NEWS |
biocViews | FunctionalGenomics, SequenceMatching, Software, Visualization |
Version | 1.22.0 |
In Bioconductor since | BioC 3.5 (R-3.4) (6 years) |
License | Artistic-2.0 |
Depends | R (>= 3.5.0) |
Imports | methods, grDevices, graphics, stats, Biostrings, GenomicRanges, IRanges, KernSmooth, plotrix, Matrix, EBImage, RColorBrewer, BiocGenerics, GenomeInfoDb |
LinkingTo | |
Suggests | BSgenome.Drerio.UCSC.danRer7, knitr, rmarkdown, testthat |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | heatmaps_1.22.0.tar.gz |
Windows Binary | heatmaps_1.22.0.zip (64-bit only) |
macOS Binary (x86_64) | heatmaps_1.22.0.tgz |
macOS Binary (arm64) | heatmaps_1.22.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/heatmaps |
Source Repository (Developer Access) | git clone [email protected]:packages/heatmaps |
Bioc Package Browser | https://code.bioconductor.org/browse/heatmaps/ |
Package Short Url | https://bioconductor.org/packages/heatmaps/ |
Package Downloads Report | Download Stats |
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