netresponse

DOI: 10.18129/B9.bioc.netresponse  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see netresponse.

Functional Network Analysis

Bioconductor version: 3.16

Algorithms for functional network analysis. Includes an implementation of a variational Dirichlet process Gaussian mixture model for nonparametric mixture modeling.

Author: Leo Lahti, Olli-Pekka Huovilainen, Antonio Gusmao and Juuso Parkkinen

Maintainer: Leo Lahti <leo.lahti at iki.fi>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("netresponse")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("netresponse")

 

HTML	R Script	microbiome R package
PDF		Reference Manual
Text		NEWS

Details

biocViews	CellBiology, Clustering, DifferentialExpression, GeneExpression, Genetics, GraphAndNetwork, Microarray, Network, NetworkInference, Software, Transcription
Version	1.58.0
In Bioconductor since	BioC 2.7 (R-2.12) (12.5 years)
License	GPL (>=2)
Depends	R (>= 2.15.1), BiocStyle, Rgraphviz, rmarkdown, methods, minet, mclust, reshape2
Imports	ggplot2, graph, igraph, parallel, plyr, qvalue, RColorBrewer
LinkingTo
Suggests	knitr
SystemRequirements
Enhances
URL	https://github.com/antagomir/netresponse
BugReports	https://github.com/antagomir/netresponse/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	netresponse_1.58.0.tar.gz
Windows Binary	netresponse_1.58.0.zip
macOS Binary (x86_64)	netresponse_1.58.0.tgz
macOS Binary (arm64)	netresponse_1.58.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/netresponse
Source Repository (Developer Access)	git clone [email protected]:packages/netresponse
Bioc Package Browser	https://code.bioconductor.org/browse/netresponse/
Package Short Url	https://bioconductor.org/packages/netresponse/
Package Downloads Report	Download Stats