DropletTestFiles

DOI: 10.18129/B9.bioc.DropletTestFiles  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see DropletTestFiles.

Test Files for Single-Cell Droplet Utilities

Bioconductor version: 3.16

Assorted files generated from droplet-based single-cell protocols, to be used for testing functions in DropletUtils. Primarily intended for storing files that directly come out of processing pipelines like 10X Genomics' CellRanger software, prior to the formation of a SingleCellExperiment object. Unlike other packages, this is not designed to provide objects that are immediately ready for analysis.

Author: Aaron Lun [ctb, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DropletTestFiles")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DropletTestFiles")

 

HTML	R Script	Test files for droplet-based single-cell utilities
PDF		Reference Manual

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData, SingleCellData
Version	1.8.0
License	GPL-3
Depends
Imports	utils, ExperimentHub, AnnotationHub, S4Vectors
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, testthat, DropletUtils
SystemRequirements
Enhances
URL
Depends On Me	OSCA.advanced, OSCA.intro, OSCA.workflows
Imports Me
Suggests Me	DropletUtils, TENxIO
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DropletTestFiles_1.8.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/DropletTestFiles
Source Repository (Developer Access)	git clone [email protected]:packages/DropletTestFiles
Package Short Url	https://bioconductor.org/packages/DropletTestFiles/
Package Downloads Report	Download Stats