sesameData

DOI: 10.18129/B9.bioc.sesameData  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see sesameData.

Supporting Data for SeSAMe Package

Bioconductor version: 3.16

Provides supporting annotation and test data for SeSAMe package. This includes chip tango addresses, mapping information, performance annotation, and trained predictor for Infinium array data. This package provides user access to essential annotation data for working with many generations of the Infinium DNA methylation array. Current we support human array (HM27, HM450, EPIC), mouse array (MM285) and the HorvathMethylChip40 (Mammal40) array.

Author: Wanding Zhou [aut, cre], Hui Shen [aut], Timothy Triche [ctb]

Maintainer: Wanding Zhou <zhouwanding at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sesameData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sesameData")

 

HTML	R Script	sesameData User Guide
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, ExperimentHub, Genome, MethylationArrayData, MicroarrayData
Version	1.16.0
License	Artistic-2.0
Depends	R (>= 4.1), ExperimentHub, AnnotationHub
Imports	utils, readr, stringr, GenomicRanges, S4Vectors, IRanges, GenomeInfoDb
LinkingTo
Suggests	BiocGenerics, sesame, testthat, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me	sesame
Imports Me	MethReg
Suggests Me	ELMER
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	sesameData_1.16.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/sesameData
Source Repository (Developer Access)	git clone [email protected]:packages/sesameData
Package Short Url	https://bioconductor.org/packages/sesameData/
Package Downloads Report	Download Stats