ArrayExpress

DOI: 10.18129/B9.bioc.ArrayExpress  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see ArrayExpress.

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Bioconductor version: 3.17

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet.

Author: Audrey Kauffmann, Ibrahim Emam, Michael Schubert, Jose Marugan

Maintainer: Jose Marugan <jcmarca at ebi.ac.uk>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ArrayExpress")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ArrayExpress")

 

PDF	R Script	ArrayExpress: Import and convert ArrayExpress data sets into R object
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, Microarray, OneChannel, Software, TwoChannel
Version	1.60.0
In Bioconductor since	BioC 2.3 (R-2.8) (15 years)
License	Artistic-2.0
Depends	R (>= 2.9.0), Biobase(>= 2.4.0)
Imports	oligo, limma, httr, utils, jsonlite, rlang, tools, methods
LinkingTo
Suggests	affy
SystemRequirements
Enhances
URL
Depends On Me	DrugVsDisease, maEndToEnd
Imports Me
Suggests Me	Hiiragi2013
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ArrayExpress_1.60.0.tar.gz
Windows Binary	ArrayExpress_1.60.0.zip
macOS Binary (x86_64)	ArrayExpress_1.60.0.tgz
macOS Binary (arm64)	ArrayExpress_1.60.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ArrayExpress
Source Repository (Developer Access)	git clone [email protected]:packages/ArrayExpress
Bioc Package Browser	https://code.bioconductor.org/browse/ArrayExpress/
Package Short Url	https://bioconductor.org/packages/ArrayExpress/
Package Downloads Report	Download Stats