PICS

DOI: 10.18129/B9.bioc.PICS  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see PICS.

Probabilistic inference of ChIP-seq

Bioconductor version: 3.17

Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.

Author: Xuekui Zhang <xzhang at stat.ubc.ca>, Raphael Gottardo <rgottard at fhcrc.org>

Maintainer: Renan Sauteraud <renan.sauteraud at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PICS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PICS")

 

HTML	R Script	The PICS users guide
PDF		Reference Manual

Details

biocViews	ChIPseq, Clustering, Sequencing, Software, Visualization
Version	2.44.0
In Bioconductor since	BioC 2.6 (R-2.11) (13.5 years)
License	Artistic-2.0
Depends	R (>= 3.0.0)
Imports	utils, stats, graphics, grDevices, methods, IRanges, GenomicRanges, Rsamtools, GenomicAlignments
LinkingTo
Suggests	rtracklayer, parallel, knitr
SystemRequirements
Enhances
URL	https://github.com/SRenan/PICS
BugReports	https://github.com/SRenan/PICS/issues
Depends On Me
Imports Me	PING
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PICS_2.44.0.tar.gz
Windows Binary	PICS_2.44.0.zip
macOS Binary (x86_64)	PICS_2.44.0.tgz
macOS Binary (arm64)	PICS_2.44.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/PICS
Source Repository (Developer Access)	git clone [email protected]:packages/PICS
Bioc Package Browser	https://code.bioconductor.org/browse/PICS/
Package Short Url	https://bioconductor.org/packages/PICS/
Package Downloads Report	Download Stats