ivygapSE

DOI: 10.18129/B9.bioc.ivygapSE  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see ivygapSE.

A SummarizedExperiment for Ivy-GAP data

Bioconductor version: 3.17

Define a SummarizedExperiment and exploratory app for Ivy-GAP glioblastoma image, expression, and clinical data.

Author: Vince Carey

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ivygapSE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ivygapSE")

 

HTML	R Script	ivygapSE -- SummarizedExperiment for Ivy-GAP
PDF		Reference Manual

Details

biocViews	GeneExpression, Sequencing, Software, Survival, Transcription, Visualization
Version	1.22.1
In Bioconductor since	BioC 3.6 (R-3.4) (6 years)
License	Artistic-2.0
Depends	R (>= 3.5.0), SummarizedExperiment
Imports	shiny, survival, survminer, hwriter, plotly, ggplot2, S4Vectors, graphics, stats, utils, UpSetR
LinkingTo
Suggests	knitr, png, limma, grid, DT, randomForest, digest, testthat, rmarkdown, BiocStyle, magick, statmod, codetools
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ivygapSE_1.22.1.tar.gz
Windows Binary	ivygapSE_1.22.1.zip
macOS Binary (x86_64)	ivygapSE_1.22.1.tgz
macOS Binary (arm64)	ivygapSE_1.22.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ivygapSE
Source Repository (Developer Access)	git clone [email protected]:packages/ivygapSE
Bioc Package Browser	https://code.bioconductor.org/browse/ivygapSE/
Package Short Url	https://bioconductor.org/packages/ivygapSE/
Package Downloads Report	Download Stats