clustifyrdatahub

DOI: 10.18129/B9.bioc.clustifyrdatahub  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see clustifyrdatahub.

External data sets for clustifyr in ExperimentHub

Bioconductor version: 3.17

References made from external single-cell mRNA sequencing data sets, stored as average gene expression matrices. For use with clustifyr to assign cell type identities.

Author: Rui Fu [aut] , Kent Riemondy [aut, cre] , RNA Bioscience Initiative [fnd], Austin Gillen [ctb] , Jay Hesselberth [ctb] , Sidhant Puntambekar [ctb]

Maintainer: Kent Riemondy <kent.riemondy at cuanschutz.edu>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("clustifyrdatahub")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clustifyrdatahub")

 

HTML	R Script	clustifyrdatahub
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, MicroarrayData, PackageTypeData, RNASeqData, SequencingData, SingleCellData
Version	1.10.0
License	MIT + file LICENSE
Depends	R (>= 4.0), ExperimentHub
Imports	utils
LinkingTo
Suggests	clustifyr, Seurat, usethis, rmarkdown, knitr, tidyr, BiocStyle
SystemRequirements
Enhances
URL	https://rnabioco.github.io/clustifyrdatahub/
BugReports	https://github.com/rnabioco/clustifyrdatahub/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	clustifyrdatahub_1.10.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/clustifyrdatahub
Source Repository (Developer Access)	git clone [email protected]:packages/clustifyrdatahub
Package Short Url	https://bioconductor.org/packages/clustifyrdatahub/
Package Downloads Report	Download Stats