# Segmentation of Bis-seq data

## Documentation for package ‘MethylSeekR’ version 1.42.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

MethylSeekR-package | Segmentation of Bis-seq methylation data
calculateFDRs | Determine false discovery rate
MethylSeekR | Segmentation of Bis-seq methylation data
plotAlphaDistributionOneChr | Calculate and plot alpha distribution.
plotFinalSegmentation | Plotting final segmentation
plotPMDSegmentation | Plotting the PMD Segmentation
readMethylome | Load Bis-seq data
readSNPTable | Load SNP table
removeSNPs | Remove CpGs overlapping SNPs
savePMDSegments | Save PMD segments
saveUMRLMRSegments | Save UMR and LMR segments
segmentPMDs | PMD segmenter
segmentUMRsLMRs | Identify UMRs and LMRs