Package: methylscaper
Type: Package
Title: Visualization of Methylation Data
Description: methylscaper is an R package for processing and visualizing data jointly
  profiling methylation and chromatin accessibility (MAPit, NOMe-seq, scNMT-seq, nanoNOMe,
  etc.). The package supports both single-cell and single-molecule data, and 
  a common interface for jointly visualizing both data types through the generation of
  ordered representational methylation-state matrices. The Shiny app allows for an 
  interactive seriation process of refinement and re-weighting that optimally 
  orders the cells or DNA molecules to discover methylation patterns and nucleosome 
  positioning.
Version: 1.10.0
Authors@R: c(person("Bacher", "Rhonda", email = "rbacher@ufl.edu", role = c("aut", "cre")), person("Parker", "Knight", role = c("aut")))
Depends: R (>= 4.1.0)
License: GPL-2
Encoding: UTF-8
Imports: shiny, shinyjs, seriation, BiocParallel, seqinr, Biostrings,
        Rfast, grDevices, graphics, stats, utils, tools, methods,
        shinyFiles, data.table, SummarizedExperiment
RoxygenNote: 7.2.3
Suggests: BiocStyle, knitr, rmarkdown, devtools, R.utils
VignetteBuilder: knitr
biocViews: DNAMethylation, Epigenetics, Sequencing, Visualization,
        SingleCell, NucleosomePositioning
Maintainer: Rhonda Bacher <rbacher@ufl.edu>
git_url: https://git.bioconductor.org/packages/methylscaper
git_branch: RELEASE_3_18
git_last_commit: e2d8ace
git_last_commit_date: 2023-10-24
Date/Publication: 2023-10-24
NeedsCompilation: no
Packaged: 2023-10-24 21:44:31 UTC; biocbuild
Author: Bacher Rhonda [aut, cre],
  Parker Knight [aut]
Built: R 4.3.1; ; 2023-10-25 04:54:19 UTC; unix
