ABSSeq

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see ABSSeq.

ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences

Bioconductor version: 3.18

Inferring differential expression genes by absolute counts difference between two groups, utilizing Negative binomial distribution and moderating fold-change according to heterogeneity of dispersion across expression level.

Author: Wentao Yang

Maintainer: Wentao Yang <wyang at zoologie.uni-kiel.de>

Citation (from within R, enter citation("ABSSeq")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ABSSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ABSSeq")

ABSSeq	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DifferentialExpression, Software
Version	1.56.0
In Bioconductor since	BioC 2.14 (R-3.1) (10 years)
License	GPL (>= 3)
Depends	R (>= 2.10), methods
Imports	locfit, limma
System Requirements
URL

Suggests	edgeR
Linking To
Enhances
Depends On Me
Imports Me	metaseqR2
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ABSSeq_1.56.0.tar.gz
Windows Binary	ABSSeq_1.56.0.zip
macOS Binary (x86_64)	ABSSeq_1.56.0.tgz
macOS Binary (arm64)	ABSSeq_1.56.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ABSSeq
Source Repository (Developer Access)	git clone [email protected]:packages/ABSSeq
Bioc Package Browser	https://code.bioconductor.org/browse/ABSSeq/
Package Short Url	https://bioconductor.org/packages/ABSSeq/
Package Downloads Report	Download Stats