KEGGREST
This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see KEGGREST.
Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)
Bioconductor version: 3.18
A package that provides a client interface to the Kyoto Encyclopedia of Genes and Genomes (KEGG) REST server. Based on KEGGSOAP by J. Zhang, R. Gentleman, and Marc Carlson, and KEGG (python package) by Aurelien Mazurie.
Author: Dan Tenenbaum [aut], Jeremy Volkening [ctb], Bioconductor Package Maintainer [aut, cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("KEGGREST")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("KEGGREST")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("KEGGREST")| Accessing the KEGG REST API | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation, KEGG, Pathways, Software, ThirdPartyClient |
| Version | 1.42.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (11 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5.0) |
| Imports | methods, httr, png, Biostrings |
| System Requirements | |
| URL |
See More
| Suggests | RUnit, BiocGenerics, knitr, markdown |
| Linking To | |
| Enhances | |
| Depends On Me | Hiiragi2013, ROntoTools |
| Imports Me | ADAM, adSplit, AnnotationDbi, attract, BiocSet, ChIPpeakAnno, CNEr, EnrichmentBrowser, famat, FELLA, gage, KEGGlincs, MetaboSignal, MWASTools, NoRCE, PADOG, pairkat, pathview, RnaSeqSampleSize, SBGNview, SMITE, transomics2cytoscape, YAPSA |
| Suggests Me | Category, categoryCompare, gatom, GenomicRanges, globaltest, iSEEu, MLP, padma, rGREAT, RTopper, SomaScan.db |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | KEGGREST_1.42.0.tar.gz |
| Windows Binary | KEGGREST_1.42.0.zip |
| macOS Binary (x86_64) | KEGGREST_1.42.0.tgz |
| macOS Binary (arm64) | KEGGREST_1.42.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/KEGGREST |
| Source Repository (Developer Access) | git clone [email protected]:packages/KEGGREST |
| Bioc Package Browser | https://code.bioconductor.org/browse/KEGGREST/ |
| Package Short Url | https://bioconductor.org/packages/KEGGREST/ |
| Package Downloads Report | Download Stats |