OmicsLonDA
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.18 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see OmicsLonDA.
Omics Longitudinal Differential Analysis
Bioconductor version: 3.18
Statistical method that provides robust identification of time intervals where omics features (such as proteomics, lipidomics, metabolomics, transcriptomics, microbiome, as well as physiological parameters captured by wearable sensors such as heart rhythm, body temperature, and activity level) are significantly different between groups.
Author: Ahmed A. Metwally, Tom Zhang, Michael Snyder
Maintainer: Ahmed A. Metwally <ametwall at stanford.edu>
citation("OmicsLonDA")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("OmicsLonDA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Lipidomics, Metabolomics, Microbiome, Proteomics, Regression, Software, Survival, TimeCourse, Transcriptomics |
| Version | 1.18.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.6) |
| Imports | SummarizedExperiment, gss, plyr, zoo, pracma, ggplot2, BiocParallel, parallel, grDevices, graphics, stats, utils, methods, BiocGenerics |
| System Requirements | |
| URL | https://github.com/aametwally/OmicsLonDA |
| Bug Reports | https://github.com/aametwally/OmicsLonDA/issues |
See More
| Suggests | knitr, rmarkdown, testthat, devtools, BiocManager |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/OmicsLonDA |
| Source Repository (Developer Access) | git clone [email protected]:packages/OmicsLonDA |
| Package Short Url | https://bioconductor.org/packages/OmicsLonDA/ |
| Package Downloads Report | Download Stats |